Ryuya Fukunaga : rechercher sur Z-Library

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1

Dicer Partner Proteins Tune the Length of Mature miRNAs in Flies and Mammals

Fukunaga, Ryuya, Han, Bo W., Hung, Jui-Hung, Xu, Jia, Weng, Zhiping, Zamore, Phillip D.

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 3.34 MB

english, 2012

2

Multistep Engineering of Pyrrolysyl-tRNA Synthetase to Genetically Encode Nɛ-(o-Azidobenzyloxycarbonyl) lysine for Site-Specific Protein Modification

Tatsuo Yanagisawa, Ryohei Ishii, Ryuya Fukunaga, Takatsugu Kobayashi, Kensaku Sakamoto, Shigeyuki Yokoyama

Journal:

Chemistry & Biology

Année:

2008

Langue:

english

Fichier:

PDF, 871 KB

english, 2008

3

Riding in silence: a little snowboarding, a lot of small RNAs

Stefan L Ameres, Ryuya Fukunaga

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 243 KB

english, 2010

4

dsRNA with 5′ overhangs contributes to endogenous and antiviral RNA silencing pathways in plants

Fukunaga, Ryuya, Doudna, Jennifer A

Journal:

The EMBO Journal

Année:

2009

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2009

5

Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea

Fukunaga, Ryuya, Yokoyama, Shigeyuki

Journal:

Nature Structural and Molecular Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2007

6

The crystal structure of leucyl-tRNA synthetase complexed with tRNALeu in the post-transfer–editing conformation

Tukalo, Michael, Yaremchuk, Anna, Fukunaga, Ryuya, Yokoyama, Shigeyuki, Cusack, Stephen

Journal:

Nature Structural and Molecular Biology

Année:

2005

Langue:

english

Fichier:

PDF, 790 KB

english, 2005

7

Aminoacylation complex structures of leucyl-tRNA synthetase and tRNALeu reveal two modes of discriminator-base recognition

Fukunaga, Ryuya, Yokoyama, Shigeyuki

Journal:

Nature Structural and Molecular Biology

Année:

2005

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2005

8

Phosphoserine aminoacylation of tRNA bearing an unnatural base anticodon

Ryuya Fukunaga, Yoko Harada, Ichiro Hirao, Shigeyuki Yokoyama

Journal:

Biochemical and Biophysical Research Communications

Année:

2008

Langue:

english

Fichier:

PDF, 683 KB

english, 2008

9

Crystal Structure of Leucyl-tRNA Synthetase from the Archaeon Pyrococcus horikoshii Reveals a Novel Editing Domain Orientation

Ryuya Fukunaga, Shigeyuki Yokoyama

Journal:

Journal of Molecular Biology

Année:

2005

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2005

10

Structural Basis for Substrate Recognition by the Editing Domain of Isoleucyl-tRNA Synthetase

Ryuya Fukunaga, Shigeyuki Yokoyama

Journal:

Journal of Molecular Biology

Année:

2006

Langue:

english

Fichier:

PDF, 877 KB

english, 2006

11

Structural Insights into the Second Step of RNA-dependent Cysteine Biosynthesis in Archaea: Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus

Ryuya Fukunaga, Shigeyuki Yokoyama

Journal:

Journal of Molecular Biology

Année:

2007

Langue:

english

Fichier:

PDF, 3.83 MB

english, 2007

12

Crystallographic Studies on Multiple Conformational States of Active-site Loops in Pyrrolysyl-tRNA Synthetase

Tatsuo Yanagisawa, Ryohei Ishii, Ryuya Fukunaga, Takatsugu Kobayashi, Kensaku Sakamoto, Shigeyuki Yokoyama

Journal:

Journal of Molecular Biology

Année:

2008

Langue:

english

Fichier:

PDF, 3.68 MB

english, 2008

13

Phosphate and R2D2 Restrict the Substrate Specificity of Dicer-2, an ATP-Driven Ribonuclease

Elif Sarinay Cenik, Ryuya Fukunaga, Gang Lu, Robert Dutcher, Yeming Wang, Traci M. Tanaka Hall, Phillip D. Zamore

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2011

14

[The Enzymes] Eukaryotic RNases and their Partners in RNA Degradation and Biogenesis, Part B Volume 32 || Loquacious, a Dicer Partner Protein, Functions in Both the MicroRNA and siRNA Pathways

Fukunaga, Ryuya

Année:

2012

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2012

15

Dicer Partner Proteins Tune the Length of Mature miRNAs in Flies and Mammals

Fukunaga, Ryuya, Han, Bo W., Hung, Jui-Hung, Xu, Jia, Weng, Zhiping, Zamore, Phillip D.

Journal:

Année:

2012

Fichier:

PDF, 34 KB

2012

16

The C-Terminal Domain of the Archaeal Leucyl-tRNA Synthetase Prevents Misediting of Isoleucyl-tRNA Ile†

Fukunaga, Ryuya, Yokoyama, Shigeyuki

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 681 KB

english, 2007

17

A SelB/EF-Tu/aIF2γ-like protein fromMethanosarcina mazeiin the GTP-bound form binds cysteinyl-tRNACys

Yanagisawa, Tatsuo, Ishii, Ryohei, Hikida, Yasushi, Fukunaga, Ryuya, Sengoku, Toru, Sekine, Shun-ichi, Yokoyama, Shigeyuki

Journal:

Journal of Structural and Functional Genomics

Année:

2015

Langue:

english

Fichier:

PDF, 2.83 MB

english, 2015

18

A universal small molecule, inorganic phosphate, restricts the substrate specificity of Dicer-2 in small RNA biogenesis

Fukunaga, Ryuya, Zamore, Phillip D.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.68 MB

english, 2014

19

Structural Basis for Non-cognate Amino Acid Discrimination by the Valyl-tRNA Synthetase Editing Domain

Fukunaga, Ryuya, Yokoyama, Shigeyuki

Journal:

Journal of Biological Chemistry

Année:

2005

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2005

20

Phosphate-binding pocket in Dicer-2 PAZ domain for high-fidelity siRNA production

Kandasamy, Suresh K., Fukunaga, Ryuya

Journal:

Proceedings of the National Academy of Sciences

Année:

2016

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2016

21

Inhibitory Effects of Nicardipine to Cytochrome P450 (CYP) in Human Liver Microsomes

Nakamura, Katsunori, Ariyoshi, Noritaka, Iwatsubo, Takafumi, Fukunaga, Yasuhisa, Higuchi, Saburou, Itoh, Kunio, Shimada, Noriaki, Nagashima, Kazuo, Yokoi, Tsuyoshi, Yamamoto, Koujirou, Horiuchi, Ryuya

Journal:

Biological & Pharmaceutical Bulletin

Année:

2005

Langue:

english

Fichier:

PDF, 130 KB

english, 2005

22

The C-terminal dsRNA-binding domain of Drosophila Dicer-2 is crucial for efficient and high-fidelity production of siRNA and loading of siRNA to Argonaute2

Kandasamy, Suresh K, Zhu, Li, Fukunaga, Ryuya

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.68 MB

english, 2017

23

Differences in Mirnome, Transcriptome and Mitochondrial Function in 2 Mouse Models of Hypertrophic Cardiomyopathy Atprehypertrophic Stage Suggest Need for Precision Medicine Approach to Treatment

Vakrou, Styliani, Fukunaga, Ryuya, Foster, D. Brian, Sorensen, Lars, Guan, Yufan, Aon, Miguel, O'Rourke, Brian, Abraham, M. Roselle

Journal:

Journal of Cardiac Failure

Année:

2017

Langue:

english

Fichier:

PDF, 437 KB

english, 2017

24

Dicer partner protein tunes the length of miRNAs using base-mismatch in the pre-miRNA stem

Zhu, Li, Kandasamy, Suresh K, Fukunaga, Ryuya

Journal:

Nucleic Acids Research

Année:

2018

Langue:

english

Fichier:

PDF, 1.69 MB

english, 2018

25

Loquacious-PD removes phosphate inhibition of Dicer-2 processing of hairpin RNAs into siRNAs

Fukunaga, Ryuya

Journal:

Biochemical and Biophysical Research Communications

Année:

2018

Langue:

english

Fichier:

PDF, 498 KB

english, 2018

26

An RNA-binding protein Blanks plays important roles in defining small RNA and mRNA profiles in Drosophila testes

Liao, Susan E., Ai, Yiwei, Fukunaga, Ryuya

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2018

27

LOTUS domain protein MARF1 binds CCR4-NOT deadenylase complex to post-transcriptionally regulate gene expression in oocytes

Zhu, Li, Kandasamy, Suresh K., Liao, Susan E., Fukunaga, Ryuya

Journal:

Nature Communications

Année:

2018

Langue:

english

Fichier:

PDF, 3.47 MB

english, 2018

28

Author Correction: LOTUS domain protein MARF1 binds CCR4-NOT deadenylase complex to post-transcriptionally regulate gene expression in oocytes

Zhu, Li, Kandasamy, Suresh K., Liao, Susan E., Fukunaga, Ryuya

Journal:

Nature Communications

Année:

2019

Langue:

english

Fichier:

PDF, 260 KB

english, 2019

29

DEAD-box RNA helicase Belle post-transcriptionally promotes gene expression in an ATPase activity-dependent manner

Liao, Susan E, Kandasamy, Suresh K, Zhu, Li, Fukunaga, Ryuya

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 3.80 MB

english, 2019

30

RNA methyltransferase BCDIN3D is crucial for female fertility and miRNA and mRNA profiles in Drosophila ovaries

Zhu, Li, Liao, Susan E., Ai, Yiwei, Fukunaga, Ryuya, Perez-Fernandez, Jorge

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 3.37 MB

english, 2019

31

Drosophila Regnase-1 RNase is required for mRNA and miRNA profile remodeling during larva-to-adult metamorphosis

Zhu, Li, Liao, Susan E., Fukunaga, Ryuya

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 2.83 MB

english, 2019